FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507771
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29880.5884542441376133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24960.4915601718097331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13440.2646862463590871No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12220.24065966744851516No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11580.22805556047903486No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA10750.21170960925299No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG9830.19359120548436204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9350.18413812525725182No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9230.18177485520047423No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7610.14987070943397712No Hit
GTCCCGGCGTTCTCCCGCGGTCGTTGCTGTA6760.13313087986513605No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5550.10930124012596229No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5130.10102979492724082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)