FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546465
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73161.338786564555827No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13940.25509410483745526No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12340.22581501102540874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.20184275296679569No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10750.19671891154968754No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9030.16524388570173754No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8720.15957106127565351No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8690.15902207826667764No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7590.13889270127089565No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.1361477862260163No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC7160.13102394480890817No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6820.12480213737384828No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6770.12388716569222183No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5960.10906462444987328No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5700.1043067717054157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)