FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483841
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21540.44518757195028946No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15030.3106392389235307No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14200.2934848431612865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14180.2930714842272565No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12180.2517355908242584No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10360.21411992782753012No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9950.20564606967991553No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9480.19593213473021098No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8120.16782372721617225No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8040.16617029148005233No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7390.15273612612407794No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7140.1475691394487032No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7070.14612238317959825No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6830.1411620759712385No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6710.1386819223670586No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6220.12855462848332405No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6100.1260744748791442No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5990.12380100074197929No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5900.12194088553884436No Hit
ACGCGCGTCCAGAGAACCCGCCGGATCGGAGCTAGGACGCGGCG5580.11532714259436469No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5520.11408706579227473No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5480.11326034792421477No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5430.11222695058913981No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG5260.108713399649885No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5170.10685328444675007No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5020.10375309244152521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)