FastQCFastQC Report
Wed 31 May 2023
EGAF00007946860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483841
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48921.0110759526373334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27900.5766357129718234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16180.3344073776302546No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15770.32593351948264No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15750.32552016054861No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12080.24966879615410847No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11240.23230772092484928No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10600.2190802350358899No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10030.20729950541603542No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8700.17981113630304169No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8590.1775376621658768No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8460.17485082909468194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8270.1709239192213971No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8170.1688571245512472No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7470.15438956186019787No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7010.14488230637750832No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6910.1428155117073584No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.14012867863616355No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6750.13950864023511855No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.13723516609795366No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6450.13330825622466885No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6300.130208064219444No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6220.12855462848332405No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5940.12276760340690435No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG5880.12152752660481439No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5560.11491378366033468No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5490.11346702739122977No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5470.11305366845719977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5230.10809336124884002No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.10726664338078006No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5100.10540652817764515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)