FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522644
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19880.38037363865269663No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17700.33866264608414137No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16140.3088144128699459No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15220.2912116086667024No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14570.27877484482745424No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12650.24203855779459824No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10020.19171749795271734No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT9490.1815767520530227No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8680.1660786309610366No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8220.1572772288594148No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7890.1509631795256427No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7610.1456058043333512No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7370.14101376845424418No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7150.13680440223172943No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6940.1327863708375108No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6370.12188028562463168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6040.11556623629085955No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6030.11537490146256342No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5960.11403555766449054No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5700.10906085212879131No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5610.10733883867412618No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5420.1037034769364998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)