FastQCFastQC Report
Sun 21 May 2023
EGAF00007946862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522644
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51870.9924537543720009No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40750.7796894253067097No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38500.7366390889400816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17850.34153266850858327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16220.3103450914963149No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14810.28336688070656124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13130.25122262955281227No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10320.19745754280160108No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8440.16148659508192958No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8400.16072125576874507No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7720.14771048744460857No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7690.14713648295972018No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7680.14694514813142406No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6940.1327863708375108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.1236022990792968No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6280.12015827216996657No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6190.11843625871530143No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6180.1182449238870053No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6110.11690558008893243No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5300.10140745899694631No Hit

[OK]Adapter Content

Adapter graph