FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487126
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46660.9578630580178434No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25670.5269683818970862No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23450.4813949573621609No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19010.3902481082923104No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15500.31819282896006373No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14410.2958166880848076No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13960.28657883176016063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13820.28370483201471486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13580.2787779753082365No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11770.24162126431354516No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11710.24038955013692556No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11360.2332045507733112No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9810.20138526787730487No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9500.19502141129810358No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9080.18639941206176636No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8790.18044612687477163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8270.16977127067740175No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8140.16710255662805928No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8020.16463912827482005No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7300.14985855815538485No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7280.14944798676317833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.1414418446151509No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6770.1389784162619117No Hit
AACCAGCAGACCAACCAGGCTGGTGGCGAAG6470.1328198453788137No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6280.12891941715285163No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5990.12296613196585689No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5870.12050270361261767No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC5680.1166022753866556No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5580.11454941842562294No Hit
CGTTGGAGCCGTTCTCCGTCTGAAGGTCGCG5500.11290713285679681No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5160.10592741918928573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)