FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384250
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40351.0500975927130773No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19480.5069616135328563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17870.4650618087182824No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13740.3575797007156799No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9450.24593363695510737No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9020.2347430058555628No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8940.23266102797657776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8810.22927781392322708No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8380.2180871828236825No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8310.2162654521795706No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7120.18529603122966817No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7050.18347430058555628No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.18347430058555628No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.18321405335068314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6860.1785296031229668No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6840.17800910865322056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6270.16317501626545217No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5960.15510735198438516No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5930.15432661027976577No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5910.15380611581001952No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5610.14599869876382562No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5580.14521795705920623No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5510.14339622641509434No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5300.13793103448275862No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5170.13454782042940794No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5150.1340273259596617No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4750.1236174365647365No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4650.12101496421600522No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4550.11841249186727391No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4250.11060507482108003No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4230.11008458035133377No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC3960.10305790500975927No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3910.10175666883539362No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG3860.10045543266102798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)