FastQCFastQC Report
Wed 31 May 2023
EGAF00007946875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393952
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11970.3038441231419056No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11960.3035902851108765No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9400.2386077491674113No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8390.21297010803346603No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8350.21195475590934937No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8210.2084010234749411No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8140.206624157257737No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7930.2012935586061246No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7090.1799711639996751No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6580.16702542441718787No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5570.14138778328324264No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5270.1337726423523678No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5240.13301112825928033No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5030.12768052960766796No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4810.1220960929250264No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4740.12031922670782226No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4470.11346559987003492No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4410.11194257168385996No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4220.1071196490943059No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4130.10483510681504346No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4120.1045812687840143No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4100.10407359272195597No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4060.10305824059783932No Hit
CGGTTTACCTTTACGGGAAGAAGATTGTGCGTGCTTGCGCAGTT4050.10280440256681016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)