FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393952
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39961.0143367719925271No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23530.5972808870116156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12000.3046056372349931No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10910.27693729185281457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9920.2518073267809276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9000.22845422792624484No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8750.22210827715051581No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8170.20738567135082445No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8170.20738567135082445No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7930.2012935586061246No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7250.18403257249614166No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7010.1779404597514418No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5570.14138778328324264No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5320.13504183250751362No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5080.12894971976281375No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5050.12818820566972625No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5030.12768052960766796No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4910.124634473235318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4770.12108074080090976No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4770.12108074080090976No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4720.11981155064576396No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4650.11803468442855983No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4600.11676549427341402No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4520.11473479002518074No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4220.1071196490943059No Hit
CAGCGTATCCTGCTGGGCTACGAAGATGAGC4110.10432743075298513No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4040.10255056453578101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)