FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435834
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20190.4632497694076185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10560.24229408444499512No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10520.24137630382209738No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.2296746008801516No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8960.20558285952908678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8790.20168229188177153No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7560.17346053772766695No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7170.16451217665441428No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6690.1534988091796418No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5730.13147207423009677No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5650.12963651298430134No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5210.11954092613242658No Hit
GATGAACTGGTGCAGCCACTGGGCCTGCGTA5200.11931148097670213No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4970.11403424239504031No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4560.10462699101033879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)