FastQCFastQC Report
Wed 31 May 2023
EGAF00007946884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405675
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41441.0215073642694275No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22100.5447710605780489No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15840.39046034387132555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11530.28421766192148884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10410.25660935477907193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9250.2280150366672829No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5570.13730202748505577No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.13138596166882358No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4830.11906082455167315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4600.11339126147778394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)