FastQCFastQC Report
Wed 31 May 2023
EGAF00007946886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423079
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24370.5760153541064436No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12080.28552587105481486No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10820.2557441990739318No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10790.25503511164581555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10390.2455806126042654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8060.19050815568723573No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7630.1803445692175693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7340.17349005741244544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6990.16521737075108905No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6770.16001739627823647No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6480.1531628844731126No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6040.14276293552740743No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5900.13945386086286488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.12078122525580329No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4250.10045405231647045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)