FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405196
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40801.006920107799682No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30380.7497606096802535No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20700.5108638782218976No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15850.391168718348651No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15770.3891943651961026No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11640.28726838369579166No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11380.2808517359500094No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10990.27122676433133597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10790.26629088144996493No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9460.23346726028884787No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9190.22680381839899705No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8970.22137434722948893No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7560.18657637291582346No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6630.16362451751744833No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6250.15424634004284346No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6160.15202519274622653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5970.14733610400892408No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5960.14708930986485552No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5940.14659572157671844No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5810.14338739770382727No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.1359835733817708No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5300.13080089635633124No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5110.12611180761902882No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4900.12092913059358927No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4860.11994195401731507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4810.11870798329697232No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC4790.11821439500883522No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4760.1174740125766296No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4130.10192598150031097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)