FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409957
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39630.9666867500737882No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37140.9059486726656698No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25260.6161621828630808No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13450.32808318921252716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11760.28685935354195685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11760.28685935354195685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11130.27149188817363773No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7020.17123747124698444No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6800.16587105476915873No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.1609924943347717No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6290.1534307256614718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5220.12733042733750125No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4930.12025651470764007No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4520.11025546581714667No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4430.10806011362167252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)