FastQCFastQC Report
Sun 21 May 2023
EGAF00007946896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410758
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25460.6198296807365894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18150.4418660135651649No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17100.41630351691263473No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16240.3953666148924671No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13560.3301213853412472No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11490.27972674908340195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11470.27923984438525845No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10980.2673106792807444No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10940.26633686988445754No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10540.25659877592158886No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10350.25197318128922624No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9880.2405309208828556No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9680.23566187390142126No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9650.23493151685420613No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9460.2303059222218435No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.22421961349505062No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9030.21983747121175976No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8620.20985592489981936No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8270.20133509268230929No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7960.1937880698610861No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7770.18916247522872348No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7690.18721485643614977No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7110.17309462018999022No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7060.17187735844463162No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6730.163843430925265No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.16165235978361955No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6290.15313152756610948No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6230.15167081347167918No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6080.14801902823560345No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5970.14534105239581455No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5880.1431499812541691No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5740.1397416483671651No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5470.13316843494222877No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5440.1324380778950136No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5430.13219462554594189No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5420.1319511731968702No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5410.13170772084779847No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA5360.1304904591024399No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5030.12245653158307324No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4950.12050891279049951No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4930.1200220080923561No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4870.11856129399792578No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4850.11807438929978237No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4830.11758748460163893No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4800.11685712755442378No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA4760.1158833181581369No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4740.11539641345999346No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4730.11515296111092176No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4610.11223153292206117No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4500.10955355708227228No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4430.10784939063877028No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4240.10322379600640767No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4200.1022499866101208No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4130.1005458201666188No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4130.1005458201666188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)