FastQCFastQC Report
Wed 31 May 2023
EGAF00007946900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387476
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15970.4121545592501213No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12240.3158905325749208No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9920.2560158564659489No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9800.25291889046031235No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9350.24130526793917556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8380.21627145939361408No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7820.2018189513673105No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7410.19123765084805253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5290.13652458474847476No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5130.13239529674095946No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4890.12620136472968646No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4330.11174885670338291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)