FastQCFastQC Report
Wed 31 May 2023
EGAF00007946901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393709
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7230.18363816930778823No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.1513808421956318No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5730.14553896405720976No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5720.14528496935553922No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5630.14299901704050455No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5460.13868110711210566No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5360.13614116009540042No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4820.12242544620519216No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4740.12039348859182797No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4660.11836153097846379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)