FastQCFastQC Report
Wed 31 May 2023
EGAF00007946902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393709
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39130.9938812676367571No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8820.2240233268734014No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7960.20217978252973645No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6430.16331859317414638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.15646073622904227No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6150.15620674152737174No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6040.15341279980899597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5990.15214282630064338No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5730.14553896405720976No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5570.1414750488304814No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5320.13512518128871834No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.1348711865870478No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4830.12267944090686268No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4710.11963150448681639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)