FastQCFastQC Report
Wed 15 May 2024
EGAF00007947084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51455720
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT758610.14742967351345973No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC701660.13636190495439574No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC524520.10193618901844148No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)