FastQCFastQC Report
Mon 13 May 2024
EGAF00007947103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59303682
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1350470.2277211050740492No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT830350.14001660133008267No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA654050.11028826169680324No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)