FastQCFastQC Report
Tue 14 May 2024
EGAF00007947161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50838893
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14081162.7697613321360084No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG1930230.3796758517145525No Hit
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG1367680.2690223801686634Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT1130900.22244780192204422No Hit
CGTATAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCCGATCAGTGT1023000.20122389368312957Illumina Single End Sequencing Primer (100% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGT693280.13636803618048882No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)