FastQCFastQC Report
Mon 13 May 2024
EGAF00007947211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65945150
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2209980.335123962869142No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCTGGACAGTGTAGATC2024520.3070005906423747Illumina Single End Sequencing Primer (100% over 33bp)
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1539610.2334682687051284No Hit
GGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCTGGACAGTGTAG936750.1420498702330649Illumina Single End Sequencing Primer (100% over 33bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA867850.1316017933085299No Hit
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA697610.10578639975798068No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)