FastQCFastQC Report
Fri 10 May 2024
EGAF00007947234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14614634
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT209420.14329472773659607No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC196300.13431742457594217No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC149480.10228104241269402No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)