FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007947275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17165370
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG453590.2642471441046712Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG203310.11844195610115017No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)