FastQCFastQC Report
Wed 1 May 2024
EGAF00007947300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18614620
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT263920.14178103017950405No Hit
CAAGCAGAAGACGGCATACGAGATCGGAAGAGCACACGTCTGAACTCCAG227550.12224262434580992Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC217560.11687587498428656No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)