FastQCFastQC Report
Wed 1 May 2024
EGAF00007947309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22092143
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG1008130.4563296552987186Illumina Single End PCR Primer 1 (100% over 30bp)
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG271490.12288984368786678No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT226190.1023848161765022No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)