FastQCFastQC Report
Sun 5 May 2024
EGAF00007947313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15774228
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG521220.3304250452066497Illumina Single End PCR Primer 1 (100% over 30bp)
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG324280.20557582913090897No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG161930.10265478602185793No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)