FastQCFastQC Report
Wed 1 May 2024
EGAF00007947424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26090220
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAGACGGCATACGAGATCGGAAGAGCACACGTCTGAACTCCAG6282562.408013424187301Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5882992.254864083169862No Hit
CAAGCAGAAGACGGCATACGAGATAGATCGGAAGAGCACACGTCTGAACT403030.15447550844722657Illumina PCR Primer Index 2 (96% over 31bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)