FastQCFastQC Report
Wed 8 May 2024
EGAF00007947452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8054913
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTATTTGTAGAAAACTCGTGTGCTTGGGAGTCCCTGATGATTAAATAA155740.1933478362832721No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA153380.1904179474067566No Hit
TTTCTATTTTTATTTGTAGAAAACTCGTGTGCTTGGGAGTCCCTGATGAT94860.11776663509587254No Hit
ATTTTCTATTTTTATTTGTAGAAAACTCGTGTGCTTGGGAGTCCCTGATG93630.11623961674073949No Hit
GGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT85890.10663057440843868No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)