FastQCFastQC Report
Wed 8 May 2024
EGAF00007947453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8054913
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAATACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGAT117950.14643236990889907No Hit
CCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGA114240.14182648527674974No Hit
GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTC103550.12855508184880457No Hit
CTAGGATCTTATCCATTTGTAGATGGAGCTTCGATAGCAGCTAGGTCTAG97330.12083308658951376No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)