FastQCFastQC Report
Wed 8 May 2024
EGAF00007947553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences238395
Total Bases35.9 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT3120.13087522808783741No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2870.12038843096541453No Hit
GTAGAAGCATGAGCGAGAAACCGATCGTTACGCACAGCGAAGAGAAAAAG2570.1078042744185071No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)