FastQCFastQC Report
Wed 8 May 2024
EGAF00007947731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8397117
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCGGCGGCCTCCACCCGGGCCCGCGCCCTAGGCTTCAAGGCTCACCG601670.716519729330912No Hit
CCCACACCCCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACAC495650.5902621101980596No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA312380.37200863105754034No Hit
CCTGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCC272270.32424223694870513No Hit
CTCCCCGGGGGCGGCCGCGACGCCCGCCGCAGCTGGGGCGATCCACGGGA192210.2288999903181056No Hit
CCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTCCC182400.2172174092608213No Hit
GGGCCCCCCACGAGCGGCGCCGGGGAGCGGGTCTTCCGTACGCCACATGT175200.208643037842631No Hit
CGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACCC171850.20465357336333412No Hit
CTTGGGCCCCCCACGAGCGGCGCCGGGGAGCGGGTCTTCCGTACGCCACA158850.1891720694138238No Hit
CCGCGGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTT147560.1757269786761337No Hit
GCGGACCCGGCGGGGGGGACCGGCCCGCGGCCCCTCCGCCGCCTGCCGCC135120.16091237028137156No Hit
CCGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACC129680.1544339563209611No Hit
CTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGAC129360.1540528731468193No Hit
CCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCCC129200.1538623315597484No Hit
GGCGGACCCGGCGGGGGGGACCGGCCCGCGGCCCCTCCGCCGCCTGCCGC128600.15314780060823255No Hit
CTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAG126570.15073030422227057No Hit
CCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTCCCA125240.14914642727974375No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC124640.1484318963282279No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA123900.14755064148802502No Hit
GCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACCCGCGCGCCCTC123880.14752682378964113No Hit
CTGCGGCGGCCTCCACCCGGGCCCGCGCCCTAGGCTTCAAGGCTCACCGC123060.1465502981559028No Hit
TCCCCCGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCC121110.14422807256347625No Hit
CCCGTCGCCGGGGCGGGGGCGCGGGGAGGAGGGGTGGGAGAGCGGTCGCG119350.1421321151056964No Hit
CGGTCCCGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCC119010.14172721423317075No Hit
CCGGGGGCGGCCGCGACGCCCGCCGCAGCTGGGGCGATCCACGGGAAGGG113000.1345699958688202No Hit
CCCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTCC112470.13393882686164787No Hit
CGGCCTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTGC112390.1338435560681124No Hit
CCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACCCGCGCGCC110300.13135460658699885No Hit
CCGACGTCGCCGCCGACCCCGTGCGCTCGCTCCGCCGTCCCCCTCTTCGG110110.13112833845235217No Hit
CCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACACGCGCGCGC109760.13071152873063457No Hit
CCCTTCTCCACTTCGGCCTTCAAAGTTCTCGTTTGAATATTTGCTACTAC108760.12952064381144146No Hit
CGGGGCCCCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGA106890.1272936890125504No Hit
CCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCCCTCCGG104640.1246141979443659No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC101950.12141071751173647No Hit
GCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACCCGCGCGCCCTCCCG99890.1189574945781987No Hit
CGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGACCCGCGCGCCCT97790.11645663624789318No Hit
GCGGCGGCCTCCACCCGGGCCCGCGCCCTAGGCTTCAAGGCTCACCGCAG96330.11471794426587126No Hit
CCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTCCCACTTAT95920.11422968144900209No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA92220.1098234072479876No Hit
CCCGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGAC90300.10753690820313686No Hit
CTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCGGCGGGCGAGACGGG89790.10692955689434837No Hit
CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATC88550.10545285959454895No Hit
CCGGGCCCGACGGCGCGACCCGCCCGGGGCGCACTGGGGACAGTCCGCCC88180.1050122321744475No Hit
CTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTA88040.10484550828576047No Hit
CCACGAGCGGCGCCGGGGAGCGGGTCTTCCGTACGCCACATGTCCCGCGC87300.10396425344555757No Hit
CTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACT86130.10257091809010165No Hit
GCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCG85240.10151103051201979No Hit
CTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACC85190.10145148626606011No Hit
CTCTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCA84710.10087986150484744No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)