FastQCFastQC Report
Wed 1 May 2024
EGAF00007947906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18199718
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT264010.14506268723504398No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC244980.13460648126525915No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC182530.10029276277797271No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)