FastQCFastQC Report
Fri 10 May 2024
EGAF00007947917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4114837
Total Bases621.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG96160.2336909092632345No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT57880.14066170786351925No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA45410.11035674074088475No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)