FastQCFastQC Report
Wed 1 May 2024
EGAF00007947951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007947951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24081221
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG3039381.2621369987842392Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG335410.13928280463851894No Hit
CGTATAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTCACCAAGTGT270520.11233649655887465Illumina Single End Sequencing Primer (100% over 33bp)
CGTATGCCGTCTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTCAC250580.10405618552315102Illumina Single End Sequencing Primer (100% over 33bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)