FastQCFastQC Report
Wed 8 May 2024
EGAF00007948012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1237156
Total Bases186.8 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA56730.45855171053610055No Hit
CAAGCAGAAGACGGCATACGAGATCGGAAGAGCACACGTCTGAACTCCAG18280.14775824552441244Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA16130.13037967725977967No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC12890.10419057903772848No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)