FastQCFastQC Report
Sat 25 May 2024
EGAF00007948065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80428418
Total Bases12.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCC5492040.6828481942787934No Hit
CCTGCGGCGGCCTCCACCCGGGCCCGCGCCCTAGGCTTCAAGGCTCACCG3441950.42795197090660164No Hit
CCCGTCGCCGGGGCGGGGGCGCGGGGAGGAGGGGTGGGAGAGCGGTCGCG2529530.3145069942815486No Hit
CTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAG2455470.3052988062005646No Hit
TCCCCCGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCC2189330.2722085121704122No Hit
CTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGAC2063350.25654489436805783No Hit
CCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCCC1906240.23701075408445807No Hit
CCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCCCTCCGG1767300.21973576553501276No Hit
CCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGA1611700.20038936983691513No Hit
CGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGG1598960.1988053526055927No Hit
GCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCG1577170.19609611120288353No Hit
CCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGA1453170.1806786750424458No Hit
CGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGC1444950.1796566482260039No Hit
CCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGG1339190.16650706719110153No Hit
CTCCCCGGGGGCGGCCGCGACGCCCGCCGCAGCTGGGGCGATCCACGGGA1304030.16213547803464193No Hit
CCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGG1249160.15531326253364824No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1199130.14909282437956195No Hit
CCCCCGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCG1184000.1472116484996634No Hit
CGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGC1057300.1314585101002484No Hit
CCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAG1054870.13115637808516886No Hit
CGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGGAGACGCCGGCGCG1053750.1310171238230746No Hit
CTGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCC1045330.12997023017411583No Hit
CCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCC1036430.12886365612711667No Hit
CCCGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGA983980.12234232929957667No Hit
CCGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAG968450.12041141975464444No Hit
TCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGA951630.1183201191399786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG857390.10660286765804593No Hit
CCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGCCCGCCCCCTCCGGG851570.10587924283180605No Hit
CCGCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGG837280.10410250764847817No Hit
GTCGCCGGGGCGGGGGCGCGGGGAGGAGGGGTGGGAGAGCGGTCGCGCCG823290.10236307271392557No Hit
TGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCGCTCCCCC806960.10033269583892598No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)