FastQCFastQC Report
Thu 16 May 2024
EGAF00007948086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43569710
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC79

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG1373990.3153544056180314No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG862540.1979678083696219No Hit
CGGAGGTCGACCCACGCCACACGTCGCACGAACGCCTGTCCGGGAGGGAC848260.1946903020469955No Hit
CGCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGC816580.18741919558335365No Hit
CGCGTCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGC807250.18527779964567126No Hit
CGGACGAGGAGGCGGGGGAGGGGACCGGCGTCCGGCCCCCGACCCTCGAG802100.1840957858108305No Hit
GGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCCCGACCGC776010.17810768077180225No Hit
CGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGGCGGGGCCGGA752070.17261303781916382No Hit
CGGCGCTCCGCCCGCCCCGCGGGGCGGCCCCGACGTCCGGGCGGCGAGCG736400.16901650251975514No Hit
CTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACCGTGGGACG691180.15863773249810476No Hit
CGGCGCCCCGCAAGCGAGGAGGACGACGGACGGACGGACGGACGGGCCGC680120.15609927171881566No Hit
GGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGC657070.15080889911821768No Hit
CGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCC642650.14749926038066355No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG638750.14660414310767733No Hit
GGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCCCGACCGCCCGCC593880.13630570412334625No Hit
GGGAAGGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGC592400.13596601859411045No Hit
CGGGAAGGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGG577440.13253244054183513No Hit
GGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCCCGACCG576900.13240850122711395No Hit
CGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCG557250.1278984872747604No Hit
CGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGGCGACGGGAATC540410.12403341679345582No Hit
GGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGC536410.12311534779552126No Hit
GGAAGGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCG525630.12064115184608756No Hit
GGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCG513000.11774234898510914No Hit
GGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGCGACGC498620.11444189093753436No Hit
CACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGCGACGCCACG495800.11379465229399048No Hit
CTCGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCA492420.11301888399073577No Hit
CGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCC490490.11257591569923232No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGC458170.10515791819592098No Hit
CGACCGGCAAGGCGGAGGTCGACCCACGCCACACGTCGCACGAACGCCTG451410.10360638158941153No Hit
CGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCCT449140.10308537743308366No Hit
GGACGGGCCGCGGACGGGCGGACGGGAGGGAGCGAGCGGGCGCGGGGGCG443810.10186205049333585No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)