FastQCFastQC Report
Wed 15 May 2024
EGAF00007948087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43569710
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC79

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCC1101080.25271685306145025No Hit
GGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGC697130.16000336013253244No Hit
CGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCC696770.15992073392271833No Hit
CGAGCTTCCGCGTCGGGGCGGGGCGGCTCCGCCGCCGCGTCCTCGGACCC656420.1506597129060533No Hit
GGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCG640040.14690022035951122No Hit
GTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGG616470.14149049878918174No Hit
CTCGTCTTCTCCCGGCCCGCTCTTCCGAACCGGGTCGGCGCGTCCCCCGG588060.13496991373135142No Hit
CTTTCTCGCGCCTTCCCCGTCGCCCCGGCCTCGCCCGTGGTCTCTCGTCT580870.13331968470756403No Hit
GGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGGCGG575990.13219964053008387No Hit
CGGCGACCCGCGGGACGCCGCGGTGTCGTCCGCCGTCGCGCGCCCGCCTC562600.12912640455949786No Hit
CGGGTCCGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCG555360.1274646996732363No Hit
GGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCG553810.12710894793653665No Hit
GGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCC503000.11544717649027271No Hit
GTCGGGGCGTGCGGCGCCCGTCCCGCCCCCGGCCCGTGCCCCTCCCTCCG493250.11320938330780718No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG490210.11251165086937692No Hit
CGGGACGCCGCGGTGTCGTCCGCCGTCGCGCGCCCGCCTCCGGCTCGCGG488030.11201130326550257No Hit
GCGGCGGGGAGCGGTCCCCGGCCGCGGCCCCGACGACGTGGGTGTCGGCG485050.11132734186204132No Hit
CGGGGATCGCCGAGGGCCGGTCGGCCGCCCCGGGTGCCGCGCGGTGCCGC481090.11041845355408608No Hit
CCCGTCCCGAGCTTCCGCGTCGGGGCGGGGCGGCTCCGCCGCCGCGTCCT453690.10412968091823425No Hit
GGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGG451170.10355129744953548No Hit
CGACGACGTGGGTGTCGGCGGGCGCGGGGGCGGTTCTCGGCGGCGTCGCG441260.10127678150715257No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)