FastQCFastQC Report
Wed 15 May 2024
EGAF00007948110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51119821
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC72

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG1358720.2657912280248399No Hit
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG1292480.25283343617341697No Hit
GCCGACGGCACCCCCGCGCCGCCCCGCCGGAGCGGGACGACCGGAGGGAG1166840.22825588532479407No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG946930.18523734658617055No Hit
CGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCG904420.1769215897684775No Hit
CGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCCTCGGAGG898660.1757948252596581No Hit
GCCGGGGCGACGGGGAAGGCGCGAGAAAGGCGGCCGGCGGGGAAGGGGAC790040.15454670703952583No Hit
GCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCGGCCGGCGGGGAAG777690.15213081438606757No Hit
GGCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCGGCCGGCGGGGAA745950.14592187245726077No Hit
CGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCCT734150.1436135701648877No Hit
GCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGGCGACGGGAAT696250.1361996161919268No Hit
GCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGGCGACGG690520.1350787202482575No Hit
CGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGGCGACGGGAATC679740.13296994917098792No Hit
CGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGGCGGGGCCGGA636630.1245368210502928No Hit
CGCCGACCCGGTTCGGAAGAGCGGGCCGGGAGAAGACGAGAGACCACGGG602480.11785643772109453No Hit
CGGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGG601940.11775080354839271No Hit
GCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCC598870.11715025371469903No Hit
GCGACGGGGAAGGCGCGAGAAAGGCGGCCGGCGGGGAAGGGGACGCCACG590720.11555596018225495No Hit
GCGGGACGGGCGCCGCACGCCCCGACCCGTCTCCCCCGCGGAGGTCGGGG590100.11543467650248619No Hit
CCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGCGCGCGC580800.11361542130595488No Hit
GGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGC550800.10774685615585392No Hit
GGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCCCGACCGC548660.10732823184181337No Hit
GGAAGGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCG530980.10386969078002055No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)