FastQCFastQC Report
Mon 13 May 2024
EGAF00007948111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51119821
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC73

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGG990390.19373894130028352No Hit
CGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCC915930.1791731625977329No Hit
CGAGCTTCCGCGTCGGGGCGGGGCGGCTCCGCCGCCGCGTCCTCGGACCC850820.1664364200336304No Hit
GTCGGGGCGTGCGGCGCCCGTCCCGCCCCCGGCCCGTGCCCCTCCCTCCG743710.14548368625938654No Hit
CGGGGATCGCCGAGGGCCGGTCGGCCGCCCCGGGTGCCGCGCGGTGCCGC695850.13612136865659213No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG637730.12475200177246316No Hit
CCCGTCCCGAGCTTCCGCGTCGGGGCGGGGCGGCTCCGCCGCCGCGTCCT609230.11917686487986726No Hit
GGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGGCGG564580.11044248374813363No Hit
CGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCC553750.10832393172894718No Hit
GGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCG512110.100178363300607No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)