FastQCFastQC Report
Wed 15 May 2024
EGAF00007948148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46533848
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC1195490.25690761701031045No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGA583360.12536251031722115No Hit
CTCGTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTG527370.11333040843731641No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)