FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007948151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48092584
Sequences flagged as poor quality0
Sequence length150
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGAAGCGGGGCTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC571530.11883952835638857No Hit
GGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGCGGGGCGCGGGACATGT492630.10243367251799156No Hit
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG488930.10166432313140006No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)