FastQCFastQC Report
Thu 16 May 2024
EGAF00007948164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48132118
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGGG1222590.25400710602429755No Hit
GTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCC1154650.23989179117361925No Hit
CTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCC1024370.2128246257519771No Hit
GGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGGAG860680.17881614933296724No Hit
CCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGCAC797780.16574795233403194No Hit
CCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGC753810.15661268012348845No Hit
CGCGAAGCGGGGCTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC753450.15653788599122107No Hit
GGGGTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCC710630.14764153948097608No Hit
GTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCAC697530.1449198641123584No Hit
GAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGCACTGG690640.14348838752535262No Hit
GGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGCCGCCGCCG658940.13690234865625486No Hit
AGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGCACTGGG621920.12921101872142837No Hit
CGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGCACTG558680.11607218281979613No Hit
CCCGCTTTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGGGC516040.10721323337568482No Hit
CCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCG507550.10544933842304632No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)