FastQCFastQC Report
Mon 13 May 2024
EGAF00007948194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50887323
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGC1707710.3355865271199273No Hit
CACCGGACCCCGGTCCCGGCGCGCGGCGGGGCACGCGCCCTCCCGCGGCG1547080.3040207086546879No Hit
TTCGGTCCCGCCGCCCCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGC923240.18142829010675213No Hit
CGGCCCCTGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCG674080.13246521142407117No Hit
CTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGA635380.12486017391797168No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)