FastQCFastQC Report
Tue 14 May 2024
EGAF00007948198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60189539
Total Bases9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCGACCCCACCCCCGGCCCCGCCCGCCCACCCCCGCACCCGCCGGAGC3078440.5114576471502796No Hit
CGGCCCCTGCCGCCCCGACCCTTCTCCCCCCGCCGCGCCCCCACGCGGCG973340.16171248628436913No Hit
CACCGGACCCCGGTCCCGGCGCGCGGCGGGGCACGCGCCCTCCCGCGGCG882550.14662846977445698No Hit
CCCGACCCGCGCGCCCTCCCGAGGGAGGACGCGGGGCCGGGGGGCGGAGA634600.10543360366990018No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)