FastQCFastQC Report
Sun 5 May 2024
EGAF00007948242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36077781
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC75

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGG886330.24567198298587156No Hit
CGGGAATCCGGCCGGCCCCGAAGACGGGGAGCCGGCGCGGCGGGGCCGGA642980.17822049532370074No Hit
CTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACCGTGGGACG605750.16790112451760822No Hit
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG601140.16662332974414362No Hit
CGGAGGTCGACCCACGCCACACGTCGCACGAACGCCTGTCCGGGAGGGAC545360.15116229016413177No Hit
CGCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGC522210.1447455984058443No Hit
CCGGGAGGGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGG481030.13333137090665304No Hit
CGGCGCTCCGCCCGCCCCGCGGGGCGGCCCCGACGTCCGGGCGGCGAGCG457330.1267622307480607No Hit
GGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGC457040.12668184886426356No Hit
CACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGCGACGCCACG446410.12373543705473461No Hit
CTCAGCCGGGCGCGCCCCCCTCTCCCCCCCGCCACCCGACGCGTGACCAC401570.11130673474624175No Hit
CCGGAACCGTCTCCTCCCCCGCACGCGCCGCAGGCCGACCCCCGGAACCC401140.1111875478150943No Hit
GGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCG396080.10978502253228935No Hit
CGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACGGGCGAGGGCCGGGGAC375820.10416937782287664No Hit
CCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGCGCGCGC369690.10247027110675128No Hit
GGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGCGACGC363960.100882035954484No Hit
GTTCGGTCCCAGGCGGGGCCACCAACGGACGTGAAGCCGGTGAGCCGCTC363210.10067415177225007No Hit
CGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGCGCGAGAAAGGCG362870.1005799109429707No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)