FastQCFastQC Report
Wed 15 May 2024
EGAF00007948243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36077781
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC76

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCC560060.1552368201359169No Hit
CGCCGATCCTCTTCTTCCCCCCGAGCGGCTCACCGGCTTCACGTCCGTTG503110.1394514812316201No Hit
GTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGG497130.13779395135194153No Hit
CTCGTCTTCTCCCGGCCCGCTCTTCCGAACCGGGTCGGCGCGTCCCCCGG423350.11734369139831521No Hit
GGCGGCTCCGCCGCCGCGTCCTCGGACCCGTCCCCCCGACCTCCGCGGGG386120.10702432059222268No Hit
CTTTCTCGCGCCTTCCCCGTCGCCCCGGCCTCGCCCGTGGTCTCTCGTCT367470.10185493392733881No Hit
GGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCACGCGGGGAAGG363600.10078225154701172No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)