FastQCFastQC Report
Sun 12 May 2024
EGAF00007948296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49102695
Total Bases7.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAGG615670.12538415661299243No Hit
CGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGCCT553550.11273311984199645No Hit
CGGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGG513610.1045991467474443No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)